Preprocess

Apply preprocessing on raw data for more effective analysis and detecting biological signal.

Methods:

• annotate hb
• annotate mito
• annotate ribo
• batch effect removal
• cell cycle scoring
• downsample data
• filter cells
• filter genes
• filter highest expr genes
• filter highly variable genes
• measure gene counts
• normalize counts
• pca
• recipes
• regress out
• remove genes
• run doubletdetection
• run scrublet
• scale to unit variance
• subsample data