rank genes groups

Rank gene groups by a cluster key according to their differential expression accross clusters or genes.

Parameters

method: str Statistical test to find differential clusters and results in adata for plotting. Options include t-test, t-test_overestim_var, wilcoxon and logreg.

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group_by: str Cluster name to group by.

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number_of_genes: int Number of genes to display.

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reference: str, default = "rest" Group to compare clusters to.

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compare_group_1: str First comparison group (violin plot).

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compare_group_2: str Second comparison group (violin plot).

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genes: List[str] List of genes to compare across clusters.

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