concat

Concatenate dataframes with batches.

Parameters

adata1: str First dataset.

adata2: str Second dataset.

batch_category1: str First batch annotation.

batch_category2: str Second batch annotation.

batch_key: str Add the batch annotation to obs using this key.

Web view

Python equivalent

adata_concat = adata1.concatenate(adata2, batch_key="BATCH", batch_categories=['1', '2'])